ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10254-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAACCGCTGCCTCCAGCGA miRNA* GCTGGATGCAGAGGTTTATC mismatches: 3 bulges: 0 |
pre-miRNA
AAGAGCAAGCAGCGCTGGATGCAGAGGTTTATCGATCGATTCTTGCTTTTGTAAACAAAAATAAATATTCACAGGAATTGATCGATGAACCGCTGCCTCC
AGCGACTTCACTCTT
dot-bracket secondary structure
(((((.(((...(((((((.((((.((((((((((((((((((((..(((((........)))))......)))))))))))))))))))).)))).)))
)))).)))..)))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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AAGAGCAAGCAGCGCTGGATGCAGAGGTTTATCGATCGATTCTTGCTTTTGTAAACAAAAATAAATATTCACAGGAATTGATCGATGAACCGCTGCCTCC
AGCGACTTCACTCTT
dot-bracket secondary structure
(((((.(((...(((((((.((((.((((((((((((((((((((..(((((........)))))......)))))))))))))))))))).)))).)))
)))).)))..)))))
SIMILARITIES| miRBase ath-MIR162b: 2e-58 PMRD ath-miR162b: 2e-58 microPC miR162: 0.0000000000004 | UniProt no hits RFAM MIR162_2: 3e-45 |
Identical with: ath-MIR162b from miRBase (MNEST040025) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
