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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Limnanthes alba
,
Paullinia cupana var. sorbilis
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Tropaeolum majus
,
Carica papaya
,
Citrus clementina
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST047407
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf10307-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAGATACGACGGAGATGGA
miRNA*
CGTCTCCGCCTCGTGTTTCATC
mismatches:
2
bulges:
2
View larger
pre-miRNA
GGAAC
CGTCTCCGCCTCGTGTTTCATC
ACGCGCCGCCGTGATTCTTCGACTACGAGGTTCATGAGTTTTCCTCCGTCTGGCTCGATCAACCCCGATTTAA
CGGAGAGGCCACGGCGGGAAACTTGACGGGGG
AGAGATACGACGGAGATGGA
TCC
dot-bracket secondary structure
(((.(
((((((((..(((((((((...
.....((.((((((..(((((....))))).))..(((((((((.((((..((((...((....(((......
))).)))))))))).))))))))).)))).))
.)))))))))))))))))).
)))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q9S7D8|APS4_ARATH: 6e-21
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
not a miRNA
additional data
degradome data
download this record