ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf16
source: PMRD, original name: ath-miRf10330-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCGACCAGGGGGTCGAGT miRNA* TCGACCAGGGGGTCGAGTAGTGTC mismatches: 4 bulges: 3 |
pre-miRNA
GATGATACTCGACCAGGGGGTCGAGTAACTTGGTAGAGCGAATGGTCGAGTGATGGTGATGGTGTGGCGAAGTGATACTCGACCAGGGGGTCGAGTAGTG
TCATC
dot-bracket secondary structure
((((((((((((((....(((((((((((((.((...(((.((.(((....))).)).....))).)).))))..)))))))))....))))))))...)
)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GATGATACTCGACCAGGGGGTCGAGTAACTTGGTAGAGCGAATGGTCGAGTGATGGTGATGGTGTGGCGAAGTGATACTCGACCAGGGGGTCGAGTAGTG
TCATC
dot-bracket secondary structure
((((((((((((((....(((((((((((((.((...(((.((.(((....))).)).....))).)).))))..)))))))))....))))))))...)
)))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10329-akr: 6e-55 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10329-akr from PMRD (MNEST047429) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
