ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10339-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGACACTCGACCTCGGGGTCGAGTG miRNA* CTCGACTTCCAGGTAGAGTGGTGTGA mismatches: 5 bulges: 0 |
pre-miRNA
GATGGTGATACTCGACTTCCAGGTAGAGTGGTGTGATCGAGTGGTGATCTGGTAATGGAGGTGAAGATACTCGGCCTCGGGGTCGAGTGATGTGGTCGAG
TGATGTGGTCGAGTGATTATCAGGTGGTGGAGGTGAAGACACTCGACCTCGGGGTCGAGTGATGTGGTC
dot-bracket secondary structure
(((..((.(((((((((((.((((.(((((...(.(((...(.(..((((((((((...........(((((((((.((.(.((((.(.....).)))).
)..)).)))))))))))))))))))..).).))).)...))))).)))).))))))))))).))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GATGGTGATACTCGACTTCCAGGTAGAGTGGTGTGATCGAGTGGTGATCTGGTAATGGAGGTGAAGATACTCGGCCTCGGGGTCGAGTGATGTGGTCGAG
TGATGTGGTCGAGTGATTATCAGGTGGTGGAGGTGAAGACACTCGACCTCGGGGTCGAGTGATGTGGTC
dot-bracket secondary structure
(((..((.(((((((((((.((((.(((((...(.(((...(.(..((((((((((...........(((((((((.((.(.((((.(.....).)))).
)..)).)))))))))))))))))))..).).))).)...))))).)))).))))))))))).))..)))
SIMILARITIES| miRBase no hits PMRD ath-miRf10338-akr: 4e-57 microPC no hits | UniProt no hits RFAM MIR854: 0.0002 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
