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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST047531
species: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10431-akr

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATGCTGCATCGGCAATCAAC

miRNA*
 TGTTGGCTGCTGTGGCATCATC

mismatches: 6
bulges: 0
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pre-miRNA
 GGTCGTTGTTGGCTGCTGTGGCATCATCAAGATTCACATCTGTTGATGGACGGTGGTGATTCACTCTCCACAAAGTTCTCTATGAAAATGAGAATCTTGA
TGATGCTGCATCGGCAATCAACGACT

dot-bracket secondary structure
((((((((...((((.((..(((((((((((((((.(((...(((.((((.(((((....))))).)))))))..(((.....))).))).)))))))))
))))))..)).))))...))))))))


SIMILARITIES
miRBase aly-MIR172a: 5e-56

PMRD ath-miRf11033-akr: 2e-64

microPC miR172: 0.0000004		UniProt no hits

RFAM mir-172: 4e-60

Identical with: ath-MIR172a from miRBase (MNEST040063)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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