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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST047535
species: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10435-akr

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTCTGCCAAAGGAGATTTGC

miRNA*
 GAATACTCCTATGGCAGATCG

mismatches: 2
bulges: 1
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pre-miRNA
 GGATTACTGGGCGAATACTCCTATGGCAGATCGCATTGGCTAGATATGCAAGTAAAATGCTTCTCTGCCAAAGGAGATTTGCCCCGCAATTC

dot-bracket secondary structure
(((((.(.((((((((.(((((.(((((((..(((((.((.......))......)))))...))))))).))))))))))))).).)))))


SIMILARITIES
miRBase ath-MIR399d: 3e-47

PMRD ath-miR399d: 3e-47

microPC miR399: 0.000001		UniProt no hits

RFAM mir-399: 5e-46

Identical with: ath-MIR399d from miRBase (MNEST040095)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
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