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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST047540
species: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10440-akr

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTCTCCAACATGGAGATTC

miRNA*
 GCTCATGTTGGAGAAGTT

mismatches: 0
bulges: 2
View larger
pre-miRNA
 GGGTGAAGAGCTCATGTTGGAGAAGTTAAGTACGTGCAAATAAGCAAATGAGACGGATTTCGTGTTTGTTGGTTTGCACGTGCCCTGCTTCTCCAACATG
GAGATTCTCACCC

dot-bracket secondary structure
((((((.(((((((((((((((((((...((((((((((((.(((((((...(((.....)))))))))).))))))))))))...))))))))))))).
))).)))))))))


SIMILARITIES
miRBase ath-MIR164a: 1e-59

PMRD ath-miRf10439-akr: 1e-59

microPC miR164: 0.00002		UniProt no hits

RFAM MIR164: 2e-49

Identical with: ath-miRf10439-akr from PMRD (MNEST047539)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
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