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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST047561
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf10461-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCACTCGACCCCGAGGTCGAGTG
miRNA*
CTCGACCAACAGGTCGAGTAGAG
mismatches:
5
bulges:
0
View larger
pre-miRNA
GAGACCA
CTCGACCAACAGGTCGAGTAGAG
GACATCACCAATTCAACCA
CCACTCGACCCCGAGGTCGAGTG
CCATC
dot-bracket secondary structure
((...((
(((((((....((((((((.(.(
(...............)).
).))))))))....)))))))))
...))
SIMILARITIES
miRBase
no hits
PMRD
ath-miRf10772-akr
:
2e-38
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ath-miRf10769-akr
from PMRD (
MNEST047869
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
not a miRNA
additional data
download this record