miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST000476
species: Cryptomeria japonica
miRNA family: MIRf877
source: miRNEST

Taxonomy by NCBI:
Cryptomeria japonica Cryptomeria Cupressaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGGATGCTGCTGCTGTGGTGG

miRNA*
 TGATGGCAGCGTGCGTTGAGC

mismatches: 4
bulges: 2
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pre-miRNA
 TTCGTGTTGGCGTTTGTGTTCCTGATGGCAGCGTGCGTTGAGCTGGGGGATGCTGCTGCTGTGGTGGATGTGTACAGAATAATACA

dot-bracket secondary structure
...((((((...((((((.(((..(((((((((.(((((.........))))))))))))))...)))....)))))).)))))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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