ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10574-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGCAAGTCATCCTTGGCTGC miRNA* AGCCGAAGGACAACTTGCCAGA mismatches: 3 bulges: 1 |
pre-miRNA
AGAGCAAAATGTAGCCGAAGGACAACTTGCCAGAAATATGTTCATCACATAATTAATCATCACATTATTCATATGCATGGTTAACAACGTTCCGGCAAGT
CATCCTTGGCTGCATTATACTCT
dot-bracket secondary structure
((((...(((((((((.(((((..(((((((.(((...((((.((((((((..((((......))))....))))..)))).))))...))).)))))))
..))))))))))))))...))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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AGAGCAAAATGTAGCCGAAGGACAACTTGCCAGAAATATGTTCATCACATAATTAATCATCACATTATTCATATGCATGGTTAACAACGTTCCGGCAAGT
CATCCTTGGCTGCATTATACTCT
dot-bracket secondary structure
((((...(((((((((.(((((..(((((((.(((...((((.((((((((..((((......))))....))))..)))).))))...))).)))))))
..))))))))))))))...))))
SIMILARITIES| miRBase ath-MIR169b: 1e-65 PMRD ath-miR169b: 1e-65 microPC miR169: 0.00002 | UniProt no hits RFAM MIR169_2: 2e-64 |
Identical with: ath-miRf10861-akr from PMRD (MNEST047961) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
