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Species belonging to selected taxon:

Cryptomeria japonica



ABOUT THIS RECORD

ID: MNEST000477
species: Cryptomeria japonica
miRNA family: MIRf1094
source: miRNEST

Taxonomy by NCBI:
Cryptomeria japonica Cryptomeria Cupressaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCAGGCACCATTCCACACTGA

miRNA*
 AGCATGGTTGGGTGTGCAG

mismatches: 4
bulges: 2
View larger
pre-miRNA
 AGAAGGTGTTTTTGCACAACCTTTTTGATAATGGCAGCACTTAGCATGGTTGGGTGTGCAGTTGCAGGTGTTCTTGTCTACAGAACAAGGCAATTCTATA
AGCAGGATATCTATCGCAAGTTCAATTCTGAAAGTAAAGAAGATAATAAAGGTTGAGATTCGCAGGCACCATTCCACACTGAAACTTCCACTACAACAAG
CAAGAGCACCTAATAATATGT

dot-bracket secondary structure
...((((((((((((......((.(((.((.(((.((...((((..(((.(((((.(((.(((((...((((((.......))))))..)))))(((...
(((....(((((.((.....((((....))))......)))))))......))).)))...))).)).)))..)))..))))..)).))).))))).)))
)))))))))))..........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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