miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST047847
species: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10747-akr

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAAGCACCAGCTCGAAGAAGCTTAG

miRNA*
 ATGCTTCTCAAGAAGGTGCATGAA

mismatches: 5
bulges: 1
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pre-miRNA
 TCGACTCGTTCAAGCACCAGCTCGAAGAAGCTTAGCTAATTTATCTTAGAAAATAATGAAAAAGCTATGCTTCTCAAGAAGGTGCATGAACAAGTTGA

dot-bracket secondary structure
((((((.(((((.(((((..((.((.(((((.(((((..(((((..(.....)..)))))..))))).))))))).))..))))).))))).))))))


SIMILARITIES
miRBase ath-MIR825: 8e-51

PMRD ath-miR825: 8e-51

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ath-MIR825 from miRBase (MNEST040143)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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