ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10979-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTTTTCACTGTTTGATTCGT miRNA* GAATCAAACAGTGAAAAGTAA mismatches: 0 bulges: 0 |
pre-miRNA
CAAAATAGTCACTTTTCACTGTTTGATTCGTACACTTAGATTGTACACCACTTTTAGTGTACAAATATATATAAAAATACACAGCGTACACTTTACATTT
GTACACTAAAAGTGATGTATAATCCAAGTGTACGAATCAAACAGTGAAAAGTAACTATTTTG
dot-bracket secondary structure
(((((((((.(((((((((((((((((((((((((((.(((((((((.((((((((((((((((((.((........(((.....))).....)).))))
)))))))))))))).))))))))).))))))))))))))))))))))))))).)))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
CAAAATAGTCACTTTTCACTGTTTGATTCGTACACTTAGATTGTACACCACTTTTAGTGTACAAATATATATAAAAATACACAGCGTACACTTTACATTT
GTACACTAAAAGTGATGTATAATCCAAGTGTACGAATCAAACAGTGAAAAGTAACTATTTTG
dot-bracket secondary structure
(((((((((.(((((((((((((((((((((((((((.(((((((((.((((((((((((((((((.((........(((.....))).....)).))))
)))))))))))))).))))))))).))))))))))))))))))))))))))).)))))))))
SIMILARITIES| miRBase ath-MIR5014: 4e-20 PMRD ath-miRf10905-akr: 2e-77 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
