miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST048079
species: Arabidopsis thaliana
source: PMRD, original name: ath-miRf10979-akr

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTTTTCACTGTTTGATTCGT

miRNA*
 GAATCAAACAGTGAAAAGTAA

mismatches: 0
bulges: 0
View larger
pre-miRNA
 CAAAATAGTCACTTTTCACTGTTTGATTCGTACACTTAGATTGTACACCACTTTTAGTGTACAAATATATATAAAAATACACAGCGTACACTTTACATTT
GTACACTAAAAGTGATGTATAATCCAAGTGTACGAATCAAACAGTGAAAAGTAACTATTTTG

dot-bracket secondary structure
(((((((((.(((((((((((((((((((((((((((.(((((((((.((((((((((((((((((.((........(((.....))).....)).))))
)))))))))))))).))))))))).))))))))))))))))))))))))))).)))))))))


SIMILARITIES
miRBase ath-MIR5014: 4e-20

PMRD ath-miRf10905-akr: 2e-77

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
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deep sequencing data evidence




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