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Species belonging to selected taxon:
Arabidopsis thaliana
ABOUT THIS RECORD
ID:
MNEST048201
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf11101-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCTCTGTATCTTCGTTGTCA
miRNA*
ACGATGAAGACATAGAAGAGC
mismatches:
2
bulges:
0
View larger
pre-miRNA
CTTGATTTGA
TCCTCTGTATCTTCGTTGTCA
TCACAAAGTTCGTTAATCTCTATTATCAAGTCCGTTGAAGGTCCTTAAGATATTTAAGTTTGAAGAAAT
TTGTGATG
ACGATGAAGACATAGAAGAGC
AGATCGAG
dot-bracket secondary structure
(((((((((.
((.(((((.((((((((((((
(((((((.(((.((((.((..(.(((((((.((......))..)))..)))).)..)).)))).))).)
))))))))
)))))))))).))))).)).)
))))))))
SIMILARITIES
miRBase
ath-MIR3932a
:
1e-65
PMRD
ath-miRf10807-akr
:
1e-65
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ath-MIR3932a
from miRBase (
MNEST040229
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
degradome data
download this record