ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR166
source: PMRD, original name: bdi-miR166
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGACGCCGGGTCTGAAA mismatches: 2 bulges: 0 |
pre-miRNA
TTTTCATGGTTGTCGAGGGGAATGACGCCGGGTCTGAAAGAAAGAAGGGGGCACGCCGGGAATGACAGCGGTTCCCTAGCTCTTTCGGACCAGGCTTCAT
TCCCCATGACTCGACCATGG
dot-bracket secondary structure
....(((((((((((.(((((((((.(((.(((((((((((....(((((((.(((.(.......).))))))))))...))))))))))).))).))))
))))).))))..))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
TTTTCATGGTTGTCGAGGGGAATGACGCCGGGTCTGAAAGAAAGAAGGGGGCACGCCGGGAATGACAGCGGTTCCCTAGCTCTTTCGGACCAGGCTTCAT
TCCCCATGACTCGACCATGG
dot-bracket secondary structure
....(((((((((((.(((((((((.(((.(((((((((((....(((((((.(((.(.......).))))))))))...))))))))))).))).))))
))))).))))..))))))).
SIMILARITIES| miRBase bdi-MIR166a: 8e-64 PMRD bdi-miR2509: 5e-62 microPC miR166: 0.000006 | UniProt no hits RFAM mir-166: 0.0000001 |
Identical with: bdi-MIR166a from miRBase (MNEST041743) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
