miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST048307
species: Brachypodium distachyon
miRNA family: MIR166
source: PMRD, original name: bdi-miR166

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TCGGACCAGGCTTCATTCCCC

miRNA*
GGAATGACGCCGGGTCTGAAA

mismatches: 2
bulges: 0

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pre-miRNA
TTTTCATGGTTGTCGAGGGGAATGACGCCGGGTCTGAAAGAAAGAAGGGGGCACGCCGGGAATGACAGCGGTTCCCTAGCTCTTTCGGACCAGGCTTCAT
TCCCCATGACTCGACCATGG

dot-bracket secondary structure
....(((((((((((.(((((((((.(((.(((((((((((....(((((((.(((.(.......).))))))))))...))))))))))).))).))))
))))).))))..))))))).

UniProt no hits

RFAM mir-166: 0.0000001

Identical with: bdi-MIR166a from miRBase (MNEST041743)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence