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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST048344
species: Brassica napus
miRNA family: MIR166
source: PMRD, original name: bna-miR166c

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 TGGATGATGCTTGGCTCGAGA

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GAGCCAAAAGTTCAGGTGGATGATGCTTGGCTCGAGACCATTAAATATGATCATTGTGATGTTGATGATGATGATGATAATGATAATGATAGTCGGACCA
GGCTTCATTCCCCTCAACTTACACGTTT

dot-bracket secondary structure
.......(((((.(((.((((((.((((((..(((.(.(((((..(((.(((((..(.((....)).)..))))).)))....))))).)..)))..)))
))).)))))).))).)))))........


SIMILARITIES
miRBase bna-MIR166c: 1e-25

PMRD bna-miR166b: 5e-19

microPC miR166: 0.00002		UniProt no hits

RFAM mir-166: 5e-19

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"



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