ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR171
source: PMRD, original name: bna-miR171e
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTGGTGTGGTTCAATC mismatches: 3 bulges: 0 |
pre-miRNA
CAATACGAGATATTGGTGTGGTTCAATCAGAAAACCACACTCTTTTGTTGTAGAGATCGGTTTGTTTGATTGAGCCGTGCCAATATCACGAG
dot-bracket secondary structure
.....((.((((((((..((((((((((((((((((...((((........))))...))))).)))))))))))))..)))))))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
CAATACGAGATATTGGTGTGGTTCAATCAGAAAACCACACTCTTTTGTTGTAGAGATCGGTTTGTTTGATTGAGCCGTGCCAATATCACGAG
dot-bracket secondary structure
.....((.((((((((..((((((((((((((((((...((((........))))...))))).)))))))))))))..)))))))).))..
SIMILARITIES| miRBase bna-MIR171e: 3e-47 PMRD bra-miR171a: 4e-43 microPC miR171: 0.000000001 | UniProt no hits RFAM MIR171_1: 7e-30 |
Identical with: bra-miR171a from PMRD (MNEST048403) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
