miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST048374
species: Brassica napus
miRNA family: MIR396
source: PMRD, original name: bna-miR396a

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTT

miRNA*
 GCTCAASAAAGCTGTGGGA

mismatches: 2
bulges: 0
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pre-miRNA
 TTCCACAGCTTTCTTGAACTTTCTTTTTCATTTCCCTTATTTTASAGCGAAATTAAATAACTAAAAATCTCTAACATTTAACACTCTASAAAAAAAAAGC
TCAASAAAGCTGTGGGA

dot-bracket secondary structure
((((((((((((.((((.((((.(((((........(((......((.((..(((......)))...)).))......)))........))))).)))).
)))).))))))))))))


SIMILARITIES
miRBase bna-MIR396a: 2e-44

PMRD ath-miR396b: 0.0000000000002

microPC miR396: 0.0000002		UniProt no hits

RFAM MIR396: 0.000000000003

MORE

miRNEST target predictions: none
non-miRNEST targets: none
additional data
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references
[1] Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM, FEBS Lett. 581:1464-1474(2007)., "Computational identification of novel microRNAs and targets in Brassica napus"



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