ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIR157
source: PMRD, original name: bol-miR157a
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATACTTCTGTCAATA mismatches: 0 bulges: 1 |
pre-miRNA
GGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACAAGGATATAAGGAAATTCGCATCTTTACTCTTTTGTGCTCTCTATACTTCTGTC
AATACC
dot-bracket secondary structure
(((.((((((((((((((((((((((.(((((.((.((((.(((................))).)))).))...))))).))))))))))).))))))))
))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
GGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACAAGGATATAAGGAAATTCGCATCTTTACTCTTTTGTGCTCTCTATACTTCTGTC
AATACC
dot-bracket secondary structure
(((.((((((((((((((((((((((.(((((.((.((((.(((................))).)))).))...))))).))))))))))).))))))))
))))))
SIMILARITIES| miRBase bol-MIR157a: 2e-55 PMRD bna-miR156c: 2e-30 microPC miR157: 2e-17 | UniProt no hits RFAM no hits |
Identical with: bol-MIR157a from miRBase (MNEST040304) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
