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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST048384
species: Brassica oleracea
miRNA family: MIR157
source: PMRD, original name: bol-miR157a

Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAC

miRNA*
 GCTCTCTATACTTCTGTCAATA

mismatches: 0
bulges: 1
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pre-miRNA
 GGTTGTTGACAGAAGATAGAGAGCACTAAGGATGACATGCAAGTACAAGGATATAAGGAAATTCGCATCTTTACTCTTTTGTGCTCTCTATACTTCTGTC
AATACC

dot-bracket secondary structure
(((.((((((((((((((((((((((.(((((.((.((((.(((................))).)))).))...))))).))))))))))).))))))))
))))))


SIMILARITIES
miRBase bol-MIR157a: 2e-55

PMRD bna-miR156c: 2e-30

microPC miR157: 2e-17		UniProt no hits

RFAM no hits

Identical with: bol-MIR157a from miRBase (MNEST040304)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"



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