ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIR171
source: PMRD, original name: bol-miR171a
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTGGTGCGGTTCAATC mismatches: 3 bulges: 0 |
pre-miRNA
ACAATGCGAGATATTGGTGCGGTTCAATCAGAAATCCACACTCTTTTGTTGTAGAGATCGGTTTGTTTGATTGAGCCGTGCCAATATCACGAGTGT
dot-bracket secondary structure
(((...((.((((((((..(((((((((((((...((...((((........))))...))....)))))))))))))..)))))))).))..)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
ACAATGCGAGATATTGGTGCGGTTCAATCAGAAATCCACACTCTTTTGTTGTAGAGATCGGTTTGTTTGATTGAGCCGTGCCAATATCACGAGTGT
dot-bracket secondary structure
(((...((.((((((((..(((((((((((((...((...((((........))))...))....)))))))))))))..)))))))).))..)))
SIMILARITIES| miRBase bol-MIR171a: 1e-49 PMRD bna-miR171d: 1e-49 microPC miR171: 0.000000001 | UniProt no hits RFAM MIR171_1: 2e-27 |
Identical with: bna-miR171d from PMRD (MNEST048366) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
