ABOUT THIS RECORDspecies: Capsicum annuum
miRNA family: MIR157
source: PMRD, original name: can-miR157
Taxonomy by NCBI:
Capsicum annuum Capsicum Capsiceae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGAGAGAGAGCAC miRNA* CACCTTGATGGGAAACCTCGGCTGTGGTGCCCTTGGAGGGCAAGAACAAGCTAGATGCATTACT mismatches: 10 bulges: 72 |
pre-miRNA
TTGACAGAAGAGAGAGAGCACGAGGAAATTCCGGTCCTATAACCATATTGAACGTGGATTCCTTGGCACCTTGATGGGAAACCTCGGCTGTGGTGCCCTT
GGAGGGCAAGAACAAGCTAGATGCATTACTCTGTGCACCCACACCCCCTGAAAAC
dot-bracket secondary structure
....(((....(((.(.((.(((((((..((((((.(.(((....))).).)).))))))))))))).))))...((....))..((.((((((((((..
...))))).............(((((......))))).))))).)).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TTGACAGAAGAGAGAGAGCACGAGGAAATTCCGGTCCTATAACCATATTGAACGTGGATTCCTTGGCACCTTGATGGGAAACCTCGGCTGTGGTGCCCTT
GGAGGGCAAGAACAAGCTAGATGCATTACTCTGTGCACCCACACCCCCTGAAAAC
dot-bracket secondary structure
....(((....(((.(.((.(((((((..((((((.(.(((....))).).)).))))))))))))).))))...((....))..((.((((((((((..
...))))).............(((((......))))).))))).)).))).....
SIMILARITIES| miRBase far-MIR529: 0.0001 PMRD can-miR156a: 8e-83 microPC miR157: 0.0001 | UniProt no hits RFAM no hits |
Identical with: can-miR156a from PMRD (MNEST048416) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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