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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST048418
species: Capsicum annuum
miRNA family: MIR157
source: PMRD, original name: can-miR157

Taxonomy by NCBI:
Capsicum annuum Capsicum Capsiceae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGAGAGAGAGCAC

miRNA*
 CACCTTGATGGGAAACCTCGGCTGTGGTGCCCTTGGAGGGCAAGAACAAGCTAGATGCATTACT

mismatches: 10
bulges: 72
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pre-miRNA
 TTGACAGAAGAGAGAGAGCACGAGGAAATTCCGGTCCTATAACCATATTGAACGTGGATTCCTTGGCACCTTGATGGGAAACCTCGGCTGTGGTGCCCTT
GGAGGGCAAGAACAAGCTAGATGCATTACTCTGTGCACCCACACCCCCTGAAAAC

dot-bracket secondary structure
....(((....(((.(.((.(((((((..((((((.(.(((....))).).)).))))))))))))).))))...((....))..((.((((((((((..
...))))).............(((((......))))).))))).)).))).....


SIMILARITIES
miRBase far-MIR529: 0.0001

PMRD can-miR156a: 8e-83

microPC miR157: 0.0001		UniProt no hits

RFAM no hits

Identical with: can-miR156a from PMRD (MNEST048416)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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