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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST048418
species: Capsicum annuum
miRNA family: MIR157
source: PMRD, original name: can-miR157

Taxonomy by NCBI:
Capsicum annuum Capsicum Capsiceae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGAGAGAGAGCAC

miRNA*
 CACCTTGATGGGAAACCTCGGCTGTGGTGCCCTTGGAGGGCAAGAACAAGCTAGATGCATTACT

mismatches: 10
bulges: 72
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pre-miRNA
 TTGACAGAAGAGAGAGAGCACGAGGAAATTCCGGTCCTATAACCATATTGAACGTGGATTCCTTGGCACCTTGATGGGAAACCTCGGCTGTGGTGCCCTT
GGAGGGCAAGAACAAGCTAGATGCATTACTCTGTGCACCCACACCCCCTGAAAAC

dot-bracket secondary structure
....(((....(((.(.((.(((((((..((((((.(.(((....))).).)).))))))))))))).))))...((....))..((.((((((((((..
...))))).............(((((......))))).))))).)).))).....


SIMILARITIES
miRBase far-MIR529: 0.0001

PMRD can-miR156a: 8e-83

microPC miR157: 0.0001		UniProt no hits

RFAM no hits

Identical with: can-miR156a from PMRD (MNEST048416)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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