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Species belonging to selected taxon:
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Paullinia cupana var. sorbilis
,
Citrus clementina
ABOUT THIS RECORD
ID:
MNEST048472
species:
Citrus sinensis
source:
PMRD, original name:
csi-miR156b
Taxonomy by NCBI:
Citrus sinensis
Citrus
Rutaceae
Sapindales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
AATCTCCATATCACATGTTACA
mismatches:
9
bulges:
2
View larger
pre-miRNA
GTAAATTAA
AATCTCCATATCACATGTTACA
TTATGCACAGGCTACATTCTGGAAAGACATTTTCATAAAGTTATAAATCAAAATCATATGGACTTTTTC
AAATCAAGAAATTAATTTCAAGCTGGTAAGCTTGATGAAAGGCAAACTTTAACAACAAACCAACATTCTAGTCTTGAGAATAAGTTCATTGCAGCAGGAT
TTTCAAGAAGAGAATCCAGAATTATTATATGGAAAGATAACAACCTCTTAGTGACTTACTACTCCCAATGAAAGGGAATTGTTTGAGGGGTATCACTGGC
TGCGGACCCATCATATCCCAAATGAAACACTCCAGGGCAATGAACATTATCATCCTGATCACTGGATACCAGAACAGATTCCATGGGCTCTACACTGTGA
TTATGCAGGCTTGTGCCCAAGGACCGCACCAGTGGCATTGAACTAGGCGGCATCATTTGGCTCAAACTGATACCAGATGTCTGTGTTGTTGGTGA
TGACA
GAAGAGAGAGAGCAC
dot-bracket secondary structure
.........
..((((....((...(((((((
(((.((((((((.....(((((.......((((((((.....((((.((........((((((((.(((
...((((((........(((((((....)))))))..((((.....)))).....................))))))))).)))))))).......((((
((((.....)))))))).)).))))..)))))))).......(((((((((......((...((((.......))))...))))))))))).(((((((.
(((((....(((....................((((...((((......))))))))....((((...))))....)))(((.(((((.(....((((..
....))))....).))))).)))))))))))))))..((((.(((((........))))).)))).......))))).))))))))...))))).
)))))
...))..))))....
SIMILARITIES
miRBase
sbi-MIR156d
:
0.000007
PMRD
sbi-miR156d
:
0.000007
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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