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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST048490
species: Gossypium hirsutum
miRNA family: MIR156
source: PMRD, original name: ghr-miR156c

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTCAGAAGAGAGTGAGCAC

miRNA*
GCTCACCCTCTATCTGTCATC

mismatches: 2
bulges: 1

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pre-miRNA
GGTGTCAGAAGAGAGTGAGCACACAGGGTTCTTTGTAGCATGCTTGAGCCTTTCATGCTAGAAGCTATGTGTGCTCACCCTCTATCTGTCATCCACT

dot-bracket secondary structure
((((.((((((((.(((((((((((.(((...((.(((((((...........))))))).))))).))))))))))).)))).)))).))))....


SIMILARITIES
miRBase ghr-MIR156c: 3e-50

PMRD ghr-miR156b: 2e-33

microPC miR156: 0.000000001
UniProt no hits

RFAM mir-156: 0.000000001

Identical with: ghr-MIR156c from miRBase (MNEST041044)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"




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