ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR156
source: PMRD, original name: ghr-miR156c
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCAGAAGAGAGTGAGCAC miRNA* GCTCACCCTCTATCTGTCATC mismatches: 2 bulges: 1 |
pre-miRNA
GGTGTCAGAAGAGAGTGAGCACACAGGGTTCTTTGTAGCATGCTTGAGCCTTTCATGCTAGAAGCTATGTGTGCTCACCCTCTATCTGTCATCCACT
dot-bracket secondary structure
((((.((((((((.(((((((((((.(((...((.(((((((...........))))))).))))).))))))))))).)))).)))).))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
GGTGTCAGAAGAGAGTGAGCACACAGGGTTCTTTGTAGCATGCTTGAGCCTTTCATGCTAGAAGCTATGTGTGCTCACCCTCTATCTGTCATCCACT
dot-bracket secondary structure
((((.((((((((.(((((((((((.(((...((.(((((((...........))))))).))))).))))))))))).)))).)))).))))....
SIMILARITIES| miRBase ghr-MIR156c: 3e-50 PMRD ghr-miR156b: 2e-33 microPC miR156: 0.000000001 | UniProt no hits RFAM mir-156: 0.000000001 |
Identical with: ghr-MIR156c from miRBase (MNEST041044) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
