ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR162
source: PMRD, original name: ghr-miR162a
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
TTTTTAGCGTTGGGGTAAAGACACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTGTTGTGAGAATAACACAAATACATGAATCGATCGATAA
ACCTCTGCATCCAGCGCCTTAACTCTCCATGAAGTTTTATGTTAGTTA
dot-bracket secondary structure
....((((...(((((.(((.(.(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)
))).)))).))))).).))).))))).(((((....)))))...))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
TTTTTAGCGTTGGGGTAAAGACACTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTGTTGTGAGAATAACACAAATACATGAATCGATCGATAA
ACCTCTGCATCCAGCGCCTTAACTCTCCATGAAGTTTTATGTTAGTTA
dot-bracket secondary structure
....((((...(((((.(((.(.(((((.((((.((((.(((((((..(((.((...((((((((((....)))))).)))).)).)))..))))))).)
))).)))).))))).).))).))))).(((((....)))))...))))
SIMILARITIES| miRBase ghr-MIR162a: 2e-80 PMRD cpa-miR162a: 1e-25 microPC miR162: 2e-46 | UniProt no hits RFAM MIR162_2: 1e-20 |
Identical with: miR162 from microPC (MNEST045545) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"
