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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST048499
species: Gossypium hirsutum
miRNA family: MIR390
source: PMRD, original name: ghr-miR390b

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGCTCAGGAGGGATAGCGCC

miRNA*
CGCTATCCATCCTGAGTTTCA

mismatches: 2
bulges: 0

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pre-miRNA
GTATGGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTAT
CCATCCTGAGTTTCA
TCGGTTCTTCTTGCTTG


dot-bracket secondary structure
(((.(((((((((.((.((((((((((.(((((((((.(((((.((((...(...((.((......)).))...)......)))).)).))).)))))))
)).)))))))))).)
).))))))))))))...



SIMILARITIES
miRBase ghr-MIR390b: 6e-71

PMRD ghr-miR390a: 3e-66

microPC miR390: 4e-50
UniProt no hits

RFAM MIR390: 0.000000000000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Khan Barozai MY, Irfan M, Yousaf R, Ali I, Qaisar U, Maqbool A, Zahoor M, Rashid B, Hussnain T, Riazuddin S, Plant Physiol Biochem. 46:739-751(2008)., "Identification of micro-RNAs in cotton"




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