miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST004850
species: Oryza sativa
miRNA family: MIR806
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGTGCTAAAAAGTCAACGGC

miRNA*
 CGTTGACTTTTTAACACATGT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 CAAACTATATGTCACTAGCTATATACCCCCTCCGTTTCAGAATGTTTGACACCGTTGACTTTTTAACACATGTTTAACCGTTCGTCTTGTTCAAAAACTT
TTGTGAAATATGTAAAATTATATGCCTACATAAAAATATATTTAGCAATGAATCAAATGATAGAAAAAGAATTAATAATTACTTAAATTTTTTGAATAAG
ACGAACGGTCAAACATGTGCTAAAAAGTCAACGGCGTCCGACATTTCGAAACGGAGTGAGTATCACTTTGTGAGTGCAATTAAC

dot-bracket secondary structure
.........((.((((.((...((((...(((((((((.(((((((.(((.((((((((((((((.(((((((((.(((((((((((((((((((((.((
((((.((((((((....((.((((....)))).)))))))))).))))...(((....))).....(((((((...)))).))).)).))))))))))))
))))))))).))))))))).)))))))))))))).))).))))))).)))))))))...))))......)).))))))......


SIMILARITIES
miRBase osa-MIR806h: 3e-96

PMRD osa-miR806h: 3e-96

microPC miR806: 9e-78		UniProt sp|P0C282|SAP18_ORYSJ: 0.0004

RFAM MIR806: 3e-96		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;