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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST004850
species: Oryza sativa
miRNA family: MIR806
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGTGCTAAAAAGTCAACGGC

miRNA*
 CGTTGACTTTTTAACACATGT

mismatches: 2
bulges: 0
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pre-miRNA
 CAAACTATATGTCACTAGCTATATACCCCCTCCGTTTCAGAATGTTTGACACCGTTGACTTTTTAACACATGTTTAACCGTTCGTCTTGTTCAAAAACTT
TTGTGAAATATGTAAAATTATATGCCTACATAAAAATATATTTAGCAATGAATCAAATGATAGAAAAAGAATTAATAATTACTTAAATTTTTTGAATAAG
ACGAACGGTCAAACATGTGCTAAAAAGTCAACGGCGTCCGACATTTCGAAACGGAGTGAGTATCACTTTGTGAGTGCAATTAAC

dot-bracket secondary structure
.........((.((((.((...((((...(((((((((.(((((((.(((.((((((((((((((.(((((((((.(((((((((((((((((((((.((
((((.((((((((....((.((((....)))).)))))))))).))))...(((....))).....(((((((...)))).))).)).))))))))))))
))))))))).))))))))).)))))))))))))).))).))))))).)))))))))...))))......)).))))))......


SIMILARITIES
miRBase osa-MIR806h: 3e-96

PMRD osa-miR806h: 3e-96

microPC miR806: 9e-78		UniProt sp|P0C282|SAP18_ORYSJ: 0.0004

RFAM MIR806: 3e-96		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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