ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR482
source: PMRD, original name: ghr-miR472
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTGCCTACTCCACCCATGCC miRNA* GATGGGTGAGGGGGTAAGACA mismatches: 3 bulges: 1 |
pre-miRNA
GGGATGGGTGAGGGGGTAAGACAATGGACTGTTTCAGTCTTTTGGAAACAGAAATAAAGAAGAAGGCTGGTTTATGTCTTGCCTACTCCACCCATGCC
dot-bracket secondary structure
((.(((((((((..(((((((((.(((((.....((((((((((....))...........))))))))))))))))))))))..)).))))))).))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGATGGGTGAGGGGGTAAGACAATGGACTGTTTCAGTCTTTTGGAAACAGAAATAAAGAAGAAGGCTGGTTTATGTCTTGCCTACTCCACCCATGCC
dot-bracket secondary structure
((.(((((((((..(((((((((.(((((.....((((((((((....))...........))))))))))))))))))))))..)).))))))).))
SIMILARITIES| miRBase ghr-MIR482b: 8e-51 PMRD no hits microPC miR482: 3e-47 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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