ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR482
source: PMRD, original name: ghr-miR482a
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTACTCCTCCCATACC miRNA* AGTGGGATGGGTGGAA mismatches: 4 bulges: 1 |
pre-miRNA
GGAAGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGAGTTTCTAAGAATGTAAAGCAAATCTTTCCTACTCCTCCCATACC
dot-bracket secondary structure
....((((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
GGAAGTGGGATGGGTGGAAAGATTTGTATTTTCTCTCTTGAGTTTCTAAGAATGTAAAGCAAATCTTTCCTACTCCTCCCATACC
dot-bracket secondary structure
....((((((.((((((((((((((((.(((.(..(((((......)))))..).))))))))))))))).)))).))))))...
SIMILARITIES| miRBase ghr-MIR482a: 4e-43 PMRD vvi-miR482: 0.001 microPC miR472: 4e-43 | UniProt no hits RFAM no hits |
Identical with: miR472 from microPC (MNEST046297) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
