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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST048525
species: Gossypium hirsutum
miRNA family: MIR482
source: PMRD, original name: ghr-miR482b

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTTCTCCTCCCATTCA

miRNA*
TTTGGGTGGGGGAGGAT

mismatches: 4
bulges: 0

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pre-miRNA
CCTTCTCCTCCCATTCAAAGTGGAGGAAATGCCCCTGGCTATACTGGTGGGAGTGCTGGTTTTGGAAGTGCCGATGACAACTATGGTTTGGGTGGGGGAG
GAT
ATG


dot-bracket secondary structure
((((((((.((((..(...((((.((.....((((..(.....)..).)))....)).(((((((.....)))).)))..)))).)..)))).)))))))
)..
...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record

references

[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"




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