ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR482
source: PMRD, original name: ghr-miR482b
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTTCTCCTCCCATTCA miRNA* TTTGGGTGGGGGAGGAT mismatches: 4 bulges: 0 |
pre-miRNA
CCTTCTCCTCCCATTCAAAGTGGAGGAAATGCCCCTGGCTATACTGGTGGGAGTGCTGGTTTTGGAAGTGCCGATGACAACTATGGTTTGGGTGGGGGAG
GATATG
dot-bracket secondary structure
((((((((.((((..(...((((.((.....((((..(.....)..).)))....)).(((((((.....)))).)))..)))).)..)))).)))))))
).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
CCTTCTCCTCCCATTCAAAGTGGAGGAAATGCCCCTGGCTATACTGGTGGGAGTGCTGGTTTTGGAAGTGCCGATGACAACTATGGTTTGGGTGGGGGAG
GATATG
dot-bracket secondary structure
((((((((.((((..(...((((.((.....((((..(.....)..).)))....)).(((((((.....)))).)))..)))).)..)))).)))))))
).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ, Genome Biol. 10:R122(2009)., "Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)"
