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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST048526
species: Gossypium hirsutum
source: PMRD, original name: ghr-miR482c

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTACTCCTCCCAATCC

miRNA*
TGGTTTTACTGAAAGCTGCCTAACTTCACAGGAGAGTCCAGGAGGATTAACCATGGAGGGATCA

mismatches: 7
bulges: 117

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pre-miRNA
TCTACTCCTCCCAATCCGCTGAGATGGAGAATGTATGCGGCCAGGTAAGATAGAAATGCCATCCGTCTGCATTCACAGAGGGGCGATGGTTTTACTGAAA
GCTGCCTAACTTCACAGGAGAGTCCAGGAGGATTAACCATGGAGGGATCA
CCTCTTGAAGGGAAGAAAAAGATGGTTAACATGGAGGCAACAACAGGATC
TGTGATATGGGGTGA


dot-bracket secondary structure
..((((((..(((...((((....((..(((((((.((((...((((.........))))..)))).))))))).))....)))).))).....(((...
(.(((((..(((((..((..(((((....)))))..))..(((((.....
))))))))))...........(((.....)))..))))).)..)))....
........)))))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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