miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Limnanthes alba
,
Paullinia cupana var. sorbilis
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Tropaeolum majus
,
Carica papaya
,
Citrus clementina
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST048526
species:
Gossypium hirsutum
source:
PMRD, original name:
ghr-miR482c
Taxonomy by NCBI:
Gossypium hirsutum
Gossypium
Malvoideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTACTCCTCCCAATCC
miRNA*
TGGTTTTACTGAAAGCTGCCTAACTTCACAGGAGAGTCCAGGAGGATTAACCATGGAGGGATCA
mismatches:
7
bulges:
117
View larger
pre-miRNA
TCTACTCCTCCCAATCC
GCTGAGATGGAGAATGTATGCGGCCAGGTAAGATAGAAATGCCATCCGTCTGCATTCACAGAGGGGCGA
TGGTTTTACTGAAA
GCTGCCTAACTTCACAGGAGAGTCCAGGAGGATTAACCATGGAGGGATCA
CCTCTTGAAGGGAAGAAAAAGATGGTTAACATGGAGGCAACAACAGGATC
TGTGATATGGGGTGA
dot-bracket secondary structure
..((((((..(((...(
(((....((..(((((((.((((...((((.........))))..)))).))))))).))....)))).
))).....(((...
(.(((((..(((((..((..(((((....)))))..))..(((((.....
))))))))))...........(((.....)))..))))).)..)))....
........)))))).
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
download this record