miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Glycine soja, Phaseolus acutifolius, Phaseolus coccineus, Cajanus cajan, Glycine max, Vigna unguiculata, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST048548
species: Glycine max
miRNA family: MIR166
source: PMRD, original name: gma-miR166a

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGAGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 ACGGAAGCTTTGTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACCCTTCTTCATCTTGATCTTGTGTAGACTACTATGCTTGTGGTCAAGGAATACATA
GTGTTGTCGGACCAGGCTTCATTCCCCCCAATTATATGCTTCCAAA

dot-bracket secondary structure
..((((((..(((...(((.((((((((..((((((..(((.(((.((......((((((((..((((((....))))))....)))))))).......)
).))).)))..))))))..)))))))).)))..))).))))))...


SIMILARITIES
miRBase gma-MIR166a: 3e-79

PMRD sly-miR166b: 0.0000000000005

microPC miR166: 0.00000003		UniProt no hits

RFAM mir-166: 0.000000000009

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence

references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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