ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR166
source: PMRD, original name: gma-miR166b
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
GCTTGCAAAGGTGAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATGGAGGAGGAGGAGGAGTAGAGTACTGAGATCAGTGAAAGTTTCCAATGGAAAT
TTACCCTCTTACACAAAAAAATGATTCTCGGACCAGGCTTCATTCCCCCCACCCAACTTTTGCTTTT
dot-bracket secondary structure
....((((((((..(((.(.(.((((((..((((((..(((((((((........((((((.((((..(((((....)))))...((((((...))))))
))))))))))..........)))).)))))..))))))..)))))).)).)))..))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
GCTTGCAAAGGTGAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATGGAGGAGGAGGAGGAGTAGAGTACTGAGATCAGTGAAAGTTTCCAATGGAAAT
TTACCCTCTTACACAAAAAAATGATTCTCGGACCAGGCTTCATTCCCCCCACCCAACTTTTGCTTTT
dot-bracket secondary structure
....((((((((..(((.(.(.((((((..((((((..(((((((((........((((((.((((..(((((....)))))...((((((...))))))
))))))))))..........)))).)))))..))))))..)))))).)).)))..))))))))....
SIMILARITIES| miRBase gma-MIR166b: 3e-79 PMRD pvu-miR166: 2e-19 microPC miR166: 0.0000000000006 | UniProt no hits RFAM mir-166: 0.00000000000004 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"
