miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST048556
species: Glycine max
miRNA family: MIR167
source: PMRD, original name: gma-miR167c

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GGTCATCTTGCAGCTTCAAT

mismatches: 1
bulges: 1
View larger
pre-miRNA
 TTTGAGAGGTTGAAGCTGCCAGCATGATCTGGTAAATCACATACTTTTTTTTTTCTCACCTCTCATGCCTAATTTTTAAGCACCAGTCATTAGAGAAAAT
AATGGTGAAAAATCCATCTATTCAATTTTTTTTTTCAAATTCAAGGTTTCCAGTATGTATCACTAATGGTGAAAAAAGTGATGGAATTTTGTAGAACATG
GGTTAAATTTACTTTTTTTTTTTTTGAGTTTTCATTTTCTTCAAGTTTCTGAGCCAAGAAATAAAAGAGACTTATAAATTGGAATTAATACTTAAAGGAA
ACCCACCAGAAGGGCAATTTGGTTATCATAAGATGTGGTTTCCATCAGGTCATCTTGCAGCTTCAATCACTCAAT

dot-bracket secondary structure
.(((((.((((((((((((.((.(((((((((((((((((((.(((....(((((((....((..(((.((.....)).)))..))......))))))).
.....(((((((..................))))))).......(((..((((..(((....((..(((((.(((((((((...(((((((.....)).)
))))....)))))))))(((((((((((((((((.(((....((((((((...............))))))))..))).))))).....)))))))))))
)..)))))..)).)))..))))..)))..))))))))))))..)))))))))))).)))))))))))).))))).


SIMILARITIES
miRBase gma-MIR167c: 2e-156

PMRD ppl-miR167b: 0.000000000001

microPC miR167: 0.00002		UniProt no hits

RFAM MIR167_1: 0.000000000006

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence

references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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