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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST048605
species: Glycine max
miRNA family: MIR1520
source: PMRD, original name: gma-miR1520b

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GTGACAGTCATCATTTAATAAGA

miRNA*
 TTATTGAATGATGACTATTACGT

mismatches: 1
bulges: 0
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pre-miRNA
 CGTGTCACGTTCTTATTGAATGATGACTATTACGTGTCATGTTCTGATCGACCAATGACAACAACAATAATTCGACATCCAATCAGAACATGACACGTGA
CAGTCATCATTTAATAAGAACGTGACATA

dot-bracket secondary structure
.(((((((((((((((((((((((((((.((((((((((((((((((((((....((.......)).....)))).......))))))))))))))))))
.))))))))))))))))))))))))))).


SIMILARITIES
miRBase gma-MIR1520b: 3e-69

PMRD gma-miR1520c: 0.000000000000007

microPC miR1520: 0.0001		UniProt no hits

RFAM no hits

Identical with: gma-MIR1520b from miRBase (MNEST040503)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



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