miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST048618
species: Glycine max
source: PMRD, original name: gma-miR1531

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGTCCATATGGGAAGACTTGTC

miRNA*

mismatches: 0
bulges: 110
View larger
pre-miRNA
 AAGTCTTCCCATATGGACGAAGAGATAGGTAAATGTTGAAGTAGGCCTGTGGGTTTCTTGGCTTCAACCTTTACCAATCCCTTCGTCCATATGGGAAGAC
TTGTCTCTCGACTTC

dot-bracket secondary structure
((((((((((((((((((((((.(((.((((((.(((((((((((((....)))))....)))))))).)))))).))).))))))))))))))))))))
))(((....)))...


SIMILARITIES
miRBase gma-MIR1531: 7e-61

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits

Identical with: gma-MIR1531 from miRBase (MNEST040530)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O, BMC Genomics. 9:160(2008)., "Novel and nodulation-regulated microRNAs in soybean roots"



Liczniki na strone;