ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR390
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCTATCTATCCTGAGCTCCA miRNA* AAGCTCATGAGGGATAGCGCCT mismatches: 3 bulges: 1 |
pre-miRNA
GTTTTGAGGAATGGTATGGAACAATCCTTGAAGCTCATGAGGGATAGCGCCTCTAAATCAAGCGGGGGGCTATCTATCCTGAGCTCCATGGTTTGTTCTT
ACCACACGACCAATT
dot-bracket secondary structure
...........(((((.(((((((.((.((.((((((.((.(((((((.(((((.........)))))))))))).)).)))))).)).)).))))))))
))))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTTTGAGGAATGGTATGGAACAATCCTTGAAGCTCATGAGGGATAGCGCCTCTAAATCAAGCGGGGGGCTATCTATCCTGAGCTCCATGGTTTGTTCTT
ACCACACGACCAATT
dot-bracket secondary structure
...........(((((.(((((((.((.((.((((((.((.(((((((.(((((.........)))))))))))).)).)))))).)).)).))))))))
))))...........
SIMILARITIES| miRBase osa-MIR390: 3e-32 PMRD osa-miR390: 3e-32 microPC miR390: 0.00000000009 | UniProt no hits RFAM MIR390: 8e-27 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
