miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST004865
species: Oryza sativa
miRNA family: MIR390
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCTATCTATCCTGAGCTCCA

miRNA*
 AAGCTCATGAGGGATAGCGCCT

mismatches: 3
bulges: 1
View larger
pre-miRNA
 GTTTTGAGGAATGGTATGGAACAATCCTTGAAGCTCATGAGGGATAGCGCCTCTAAATCAAGCGGGGGGCTATCTATCCTGAGCTCCATGGTTTGTTCTT
ACCACACGACCAATT

dot-bracket secondary structure
...........(((((.(((((((.((.((.((((((.((.(((((((.(((((.........)))))))))))).)).)))))).)).)).))))))))
))))...........


SIMILARITIES
miRBase osa-MIR390: 3e-32

PMRD osa-miR390: 3e-32

microPC miR390: 0.00000000009		UniProt no hits

RFAM MIR390: 8e-27		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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