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Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST048668
species: Ipomoea batatas
source: PMRD, original name: iba-miR157

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAT

miRNA*
 CGCTCATTGTGACCTGCCAATCGCCTCCGGCAACTCCTCTTAGCTTCATCAAACTGGGCTAATT

mismatches: 5
bulges: 84
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pre-miRNA
 TTGACAGAAGATAGAGAGCATGCTAGAAATTACATTGATAAGCTATGTGGTTCAGAGACCAATCTTCTTATGAGTTCCAATAAGGAGTTGGTTTGTCCCC
CCACTGGTATTATGTCTTCAGGTTGACCCTTCACCATGAGAATCATATGTAATTCTCCGGCGGCGCTCATTGTGACCTGCCAATCGCCTCCGGCAACTCC
TCTTAGCTTCATCAAACTGGGCTAATTCATGAAACCTGCTGCATTGCTGACAGAAGCGCTGTTGAACTCCATTTATAAGTACT

dot-bracket secondary structure
(..((((.((.(((.((((.(((..((((((((((((((..((((.((((...(.(((((((.((((((((........))))))))))))))).)....
))))))))........(((((((.((....))))).)))).)))).)))))))).))..)))..)))).(..(((..((((..........)))).....
..((((((.((......)))))))).)))..)...))))).....(((......))).))))..)..................


SIMILARITIES
miRBase vvi-MIR156i: 0.001

PMRD ini-miR157b: 2e-91

microPC miR157: 0.001		UniProt sp|Q9S758|SPL5_ARATH: 4e-19

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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