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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST048669
species: Ipomoea nil
source: PMRD, original name: ini-miR157a

Taxonomy by NCBI:
Ipomoea nil Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAT

miRNA*
 TACGTCTTCAGGTTGA

mismatches: 6
bulges: 5
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pre-miRNA
 TTGACAGAAGATAGAGAGCATGCTAGAAATTACATTGATAAGCTATGTGGTTCAGAGACCAATCTTCTTATGAGTTCCAATAAGGAGTTGGTTTGTCCCC
CCACTGGTATTACGTCTTCAGGTTGA

dot-bracket secondary structure
(..((.((((((.......(((((((.((((((((.(.....).))))))))...(((((((.((((((((........)))))))))))))))......
...)))))))...))))))..))..)


SIMILARITIES
miRBase vvi-MIR156i: 0.0004

PMRD ini-miR157b: 2e-67

microPC miR157: 0.0004		UniProt no hits

RFAM no hits

Identical with: ini-miR157b from PMRD (MNEST048670)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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