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Species belonging to selected taxon:
Ipomoea batatas
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST048673
species:
Ipomoea nil
miRNA family:
MIR167
source:
PMRD, original name:
ini-miR167
Taxonomy by NCBI:
Ipomoea nil
Ipomoea
Ipomoeeae
Convolvulaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG
miRNA*
GATCTCTTGTGCGCACCGGTATTTA
mismatches:
7
bulges:
5
View larger
pre-miRNA
TGAAGCTGCCAGCATGATCTG
GTAAGATAGAACAAAATCTTGGGTTTTCTTTTTCCCACTTTTTCTTTTATGGGGTTTTCATCTTTCTGCAGAAATAGAA
TTCACTGTACCAAAAGAACACATCTTTGGGGTTTTTTTCTGTTCTTCATTCTCCCCCCTTCTGTTTCAATTCTTTTTTTTGGTTGGTTGGTATGGGTTCT
GTACATAGTTTAAAGATTGGAGAGTGAATTATGCCTAAAGTAGACA
GATCTCTTGTGCGCACCGGTATTTA
dot-bracket secondary structure
....((((...((((((((((
....(((((((.(((((((..(((.((((((((((((............)))))............(((((........
....)))))..))))))).))....)..))))))).))))))).((((((((((.(((..(((..((((((.........)))))).)))...))).(((
.............)))..))))))))))................))
))))....))))....)))).....
SIMILARITIES
miRBase
csi-MIR167c
:
0.0000009
PMRD
pts-miR167
:
0.0000009
microPC
miR167
:
0.00001
UniProt
no hits
RFAM
MIR167_1: 0.00002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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