miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus

ABOUT THIS RECORD

ID: MNEST048685
species: Lactuca sativa
miRNA family: MIR162
source: PMRD, original name: lsa-miR162

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GTGTGTGGATATTCGA

mismatches: 7
bulges: 3

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pre-miRNA
TCGATAAACCTCTGCATCCAGCGCTCACCACCACTCCCTGTTCCGTTTCTGTTTACTGTATGTGTGTGTTACTGTGTGTGGATATTCGA

dot-bracket secondary structure
((((......((..((..(((....((((((.((.......................))..))).)))...)))..))..))...))))

UniProt no hits

RFAM MIR162_2: 0.0003

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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